DATABASES

GENOME ENGINEERING

Addgene
CRISPOR
CRISPR-ID Detecting CRISPR mediated indels by Sanger sequencing

CrispyCrunch a tool for defining batches of CRISPR edits and analyzing their basic effects

ChopChop
CRISP Design
genome-engineering.org
IDT Integrated DNA Technologies
IDT Resuspension Calculator

inDelphi predicts the heterogeneous mixture of indels resulting from microhomology-mediated end-joining (MMEJ) and non-homologous end-joining (NHEJ) at a CRISPR-induced cut.

VectorBuilder

STEM CELLS

Human Induced Pluripotent Stem Cells Initiative

UNDIAGNOSED AND RARE DISORDERS

Genetic and Rare Diseases Information Center (GARD) of the NCATS, NIH
Rare Diseases Clinical Research Network (RDCRN) of the NCATS, NIH
The portal for rare diseases and orphan drugs (ORPHA)
Undiagnosed Diseases Network (UDN) Harvard
Rare Genomics Institute

GENETIC INFORMATION SERVERS, DATABASES, SEQUENCE ANALYSIS TOOLS

Allen Brain Atlas
Bioconductor
BioGPS
BiQ Analyzer (Visualization and quality control of DNA methylation data from bisulfite sequencing)
BiSearch (Primer-design algorithm for bisulfite converted DNA sequences)
Bowtie (Ultrafast, memory-efficient short read aligner)
Brain Atlas (KEGG)
CpG Plot Search
Database for Annotation, Visualization and Integrated Discovery v6.7
Ensembl
GeneCards (Database of human genes that provides genomic information on known and predicted human genes)
Genetics Home Reference
Gene Expression Omnibus (Public functional genomics data repository)
Gene Ontology
Gene Nomenclature Committee (HUGO)
GTExPORTAL (The Genotype-Tissue Expression (GTEx) project)
Integrative Genomics Viewer (IGV) (High-performance genomics data visualization and exploration)
In-Silico PCR (UCSC)
International Gene Trap Consortium
KEGG Pathway Database (Diagrams of molecular interactions, reactions, and relations)
Livestock Genomics (Provides access to interactive genome maps of cattle and sheep)
MethLAB (Package for the analysis of array-based DNA methylation data)
MethPrimer (Design primers for methylation PCRs)
microRNA predictive models
Mouse Genome Informatics (International database resource for the laboratory mouse)
NEBcutter V2.0 (Find the sites for all Type II and Type III restriction enzymes)
PubMed
Reactome
R environment for statistical computing
RTPrimerDB (Helmholtz Zentrum Munchen Database for primer and probe sequences used in real-time PCR assays)
Sigenae (Information System for Analysis of Breeding Animals’ Genome)
QUMA (Align, visualize and quantify bisulfite sequence data for CpG methylation analysis)
UCSC Genome Bioinformatics (Exploring sequences)
UCSC (Data files formats)
UniGene (View of the transcriptome)

INTRANET

MDC services and platforms (IRIS)

CHARITE Viral Core Facility

MDC Intranet
MDC Events
MDC Crush ftp
LGC Genomics (MDC)
MDC MailApp
WUM MailApp
IGHZ MailApp
IGHZ EOD