FUNCTIONALGENOMICS.PL DATASETS

NextGene

Novel calcineurin A (PPP3CA) mutation in NPCs and NGN2 neurons of patient with epileptic encephalopathy and dysmorphy. Lisowski P, Ploski R. NCBI SRA accession: SRP128828 Temporary Submission ID: SUB3434765

Interferon induced SLFNs and tumorigenesis. Arslan AD, Lisowski P, Platanias LC. NCBI Bioproject PRJNA341338

Adipose tissue mesenchymal stem cells (AMSCs) DNA methylation profile – Illumina NextSeq 500; TruSeq DNA Methylation-seq (RRBS): to be published 

HMGN1 and HMGN2 KO in the modulation of cortical and hippocampal transcription – Illumina GAIIx TruSeqmRNA-seq differential exone usage level: to be published 

HMGN1 overexpression in the modulation of cortical and hippocampal transcription – Illumina GAIIx TruSeq mRNA-seq differential exone usage level: to be published 

Microarrays

Regulatory role of SLFN5 in type I interferon signaling: Arslan AD, Lisowski P, Platanias LC. GEO accession: GSE88771

Essential role of SIRTs in type I interferon signaling: Mehrota S, Lisowski P, Platanias LC. GEO accession: GSE66033

Central role of ULK1 in type I interferon signaling. Saleiro D, Lisowski P, Platanias LC. GEO accession: GSE60778

Transcriptomic analysis of prefrontal cortex, hippocampus, and nucleus accumbens of alcohol preferring and non-preferring rats. Stankiewicz AM, Goscik J, Dyr W, Murat M, Juszczak GR, Ryglewicz D, Swiergiel AH, Wieczorek M, Stefanski R, Lisowski P. GEO accesssion: GSE65064

Gene expression profiling of prefrontal cortex of mice subjected to acute and chronic social stress. Stankiewicz AM, Goscik J, Swiergiel AH, Majewska A, Wieczorek M, Juszczak GR, Lisowski P. GEO accession: GSE64734

Effect of acute and chronic social stress on hippocampal transcriptome in mice. Stankiewicz AM, Goscik J, Gruba K, Majewska A, Swiergiel AH, Juszczak GR, Lisowski P. GEO accession: GSE59070

Effects of chronic desipramine treatment on hippocampal transcriptome in mice differing in response to antidepressants. Lisowski P, Goscik J, Swiergiel AH. GEO accession: GSE27532

Comparing gene expression profiles in the mammary glands of high- and low-milk-yield Holstein Friesian cows. Lisowski P, Goscik J, Kosciuczuk EM, Olbromski R, Bagnicka E, Zwierzchowski L. GEO accesion: GSE33680

Gene expression profiling in bovine mammary gland pathophysiology. Lisowski P, Kosciuczuk E. Goscik J, Jarczak J, Zwierchowski L, Bagnicka E. GEO accession: GSE34031